PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g00520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LSD
Protein Properties Length: 186aa    MW: 19413.7 Da    PI: 8.3093
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g00520genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD137.34.4e-121840123
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                C+gCrt+L YPrGA++V+Ca+C+
  CA02g00520 18 CSGCRTVLLYPRGASNVCCAVCN 40
                **********************9 PP

2zf-LSD145.61.2e-145781125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggCrtlL+ PrGA+sVRC++C+t+
  CA02g00520 57 CGGCRTLLMHPRGATSVRCSCCHTM 81
                ***********************96 PP

3zf-LSD1391.3e-1295118124
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                 Cg+Cr +L+YP GApsV+Ca+C+ 
  CA02g00520  95 CGNCRMMLMYPCGAPSVKCAVCHY 118
                 **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.0E-111543IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-101840IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.4E-165484IPR005735Zinc finger, LSD1-type
PfamPF069439.1E-135780IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.8E-1192121IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-1295119IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVICLIFCSA DMQSQLTCSG CRTVLLYPRG ASNVCCAVCN SLTPVPPPGM EMAQLICGGC  60
RTLLMHPRGA TSVRCSCCHT MNLVPGPNQF AHVYCGNCRM MLMYPCGAPS VKCAVCHYIT  120
NVNVRDGRAH APLPPPNGTV TAASASSSTA KARSQNQTVV VQNPMSVDES GKLVSNVVVG  180
VTTTS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132980.0BT013298.1 Lycopersicon esculentum clone 134929F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559352.11e-120PREDICTED: protein LSD1-like
RefseqXP_016559351.11e-120PREDICTED: protein LSD1-like
RefseqXP_016559350.11e-120PREDICTED: protein LSD1-like
SwissprotQ6ASS28e-67LOL3_ORYSJ; Protein LOL3
TrEMBLA0A0V0I1E01e-118A0A0V0I1E0_SOLCH; Putative ovule protein (Fragment)
STRINGPGSC0003DMT4000546161e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-57LSD family protein